PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g016730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8115.89 Da    PI: 10.9176
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g016730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.98.3e-42876270
            S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    ++a+veakGlnPGlivllvvggll+++l++ny++y+yaqknlPP+kkkPvskkklkreklkqGv+vPGe
  Csa05g016730.1  8 GKAAVEAKGLNPGLIVLLVVGGLLVTLLIANYVMYMYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 76
                    5789****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.1E-371276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSSQGSAGKA AVEAKGLNPG LIVLLVVGGL LVTLLIANYV MYMYAQKNLP PKKKKPVSKK  60
KLKREKLKQG VPVPGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3728922e-71AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBankAY0854392e-71AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBankBT0026692e-71BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509388.12e-45PREDICTED: DNA-binding protein S1FA2-like
SwissprotQ423371e-29S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A118K0475e-22A0A118K047_CYNCS; Uncharacterized protein
TrEMBLW9SCA31e-22W9SCA3_9R
STRINGAT2G37120.13e-27(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.17e-11S1FA-like DNA-binding protein